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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CBP
wikigenes
PDBj
CellType: Imaginal leg disc
ATCC
MeSH
RIKEN BRC
SRX15369009
GSM6167308: ChIP-CBP-T1-rep1; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CBP
Cell type
Cell type Class
Larvae
Cell type
Imaginal leg disc
NA
NA
Attributes by original data submitter
Sample
source_name
T1 leg imaginal discs, wandering larvae
genotype
isogenic w1118 (BL5905)
chip antibody
rabbit anti-CBP
genome build
dm3
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tissues were crosslinked with 1% formaldehyde for 10 minutes at RT, and were sonicated. DNA was purified from input and ChIP samples. ChIP-seq libraries were constructed using illumina TruSeq ChIP Library Preparation Kit
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
16247852
Reads aligned (%)
94.4
Duplicates removed (%)
88.5
Number of peaks
1944 (qval < 1E-05)
dm3
Number of total reads
16247852
Reads aligned (%)
95.6
Duplicates removed (%)
84.2
Number of peaks
4974 (qval < 1E-05)
Base call quality data from
DBCLS SRA